Genomic Surveillance and
Outbreak Investigation Platform

Identify pathogens, characterize genomes, detect clusters, and investigate transmission using bacterial and viral genomic sequencing data.

Start New Investigation

Upload FASTQ files from one or more samples to begin an analysis.

Explore Surveillance Data

Search public genomes, outbreaks, clusters, and metadata.

View Surveillance Dashboards

Monitor circulating pathogens, emerging clusters, and AMR trends.

Upcoming Events

TBD —

Webinar: Introduction to MAAGE

Date & Time: TBD

Learn More

TBD —

Workshop: Genomic Epidemiology Using MAAGE

Date & Location: TBD

Learn More

View Events

Coming Soon • Announcement

Public Launch of the MAAGE Platform

We are excited to announce the upcoming public launch of the MAAGE platform.

Date: TBD • Webinar

Webinar: Introduction to MAAGE

Join us for an introductory webinar covering the core features of the MAAGE platform.

View Announcements

Investigate a Suspected Outbreak

Determine if isolates are related and part of an existing cluster.

Identify & Characterize a New Sample

Start with sequence data to identify the pathogen and characterize an isolate.

I Have...

FASTQ reads

Start New Investigation

Assembled genomes

Typing & Cluster Detection

Genome IDs / Accession numbers

Comparative Analysis

Suspected outbreak

Outbreak Investigation

Viral sequences

Viral Analysis Workflow

AMR question

AMR Analysis

Genomic Surveillance and Outbreak Investigation Platform

Start New Investigation

Explore Surveillance Data

View Surveillance Dashboards

Upcoming Events

Webinar: Introduction to MAAGE

Workshop: Genomic Epidemiology Using MAAGE

Public Launch of the MAAGE Platform

Webinar: Introduction to MAAGE

Investigate a Suspected Outbreak

Identify & Characterize a New Sample

I Have...

Genomic Surveillance and
Outbreak Investigation Platform